Chapter 3 MarkDuplicates | A practical introduction to GATK 4 on Biowulf (NIH HPC)
Frontiers | UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
Should we run MarkDuplicates on PCR-Free Libraries made using PCR-Free Kits to take care of Optical Duplicates ? – GATK
Comparison of speed, memory peak and processing results of different... | Download Scientific Diagram
picard/src/main/java/picard/sam/markduplicates/MarkDuplicates.java at master · broadinstitute/picard · GitHub
Alignment File Processing | Variant Analysis
Identifying duplicate reads in RNA-Seq data using Picard.MarkDuplicates in GenePattern - YouTube
Picard MarkDuplicates with dovetail reads · Issue #416 · broadinstitute/ picard · GitHub
MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris | SpringerLink
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
ChIP-Seq Alignment and QC : Basepair Support
Alignment File Processing | Variant Analysis
Minimal differences between Picard, SAMTools, and no duplicate removal... | Download Table
Faster NGS Duplicate Marking. Introduction | by Eric Scott | grail-eng | Medium
Minimal differences between Picard, SAMTools, and no duplicate removal... | Download Table
Alignment File Processing | Variant Analysis
Identifying duplicate reads in RNA-Seq data using Picard.MarkDuplicates in GenePattern - YouTube
Variant (SNP) calling - an introduction (with a worked example, using FreeBayes / GATK in Galaxy) | PPT
rnaseq: Output
Minimal differences between Picard, SAMTools, and no duplicate removal... | Download Table
From raw reads to variants - ppt download
Chapter 3 MarkDuplicates | A practical introduction to GATK 4 on Biowulf (NIH HPC)
